CDS

Accession Number TCMCG016C13258
gbkey CDS
Protein Id OMO78777.1
Location join(139068..139195,139669..139728,139960..140065,140303..140371,140474..140527,140649..140756,141033..141182,141286..141630,141765..144154,144425..147022,147104..147419,147797..148249)
Organism Corchorus capsularis
locus_tag CCACVL1_14126

Protein

Length 2258aa
Molecule type protein
Topology linear
Data_file_division PLN
dblink BioProject:PRJNA215142; BioSample:SAMN03290679;
db_source AWWV01010520.1
Definition Mediator complex, subunit Med12 [Corchorus capsularis]
Locus_tag CCACVL1_14126

EGGNOG-MAPPER Annotation

COG_category K
Description mediator of RNA polymerase II transcription subunit
KEGG_TC -
KEGG_Module -
KEGG_Reaction -
KEGG_rclass -
BRITE -
KEGG_ko -
EC -
KEGG_Pathway -
GOs GO:0005575        [VIEW IN EMBL-EBI]
GO:0005622        [VIEW IN EMBL-EBI]
GO:0005623        [VIEW IN EMBL-EBI]
GO:0005634        [VIEW IN EMBL-EBI]
GO:0005654        [VIEW IN EMBL-EBI]
GO:0006139        [VIEW IN EMBL-EBI]
GO:0006351        [VIEW IN EMBL-EBI]
GO:0006352        [VIEW IN EMBL-EBI]
GO:0006366        [VIEW IN EMBL-EBI]
GO:0006367        [VIEW IN EMBL-EBI]
GO:0006725        [VIEW IN EMBL-EBI]
GO:0006807        [VIEW IN EMBL-EBI]
GO:0008150        [VIEW IN EMBL-EBI]
GO:0008152        [VIEW IN EMBL-EBI]
GO:0009058        [VIEW IN EMBL-EBI]
GO:0009059        [VIEW IN EMBL-EBI]
GO:0009987        [VIEW IN EMBL-EBI]
GO:0010467        [VIEW IN EMBL-EBI]
GO:0016070        [VIEW IN EMBL-EBI]
GO:0016592        [VIEW IN EMBL-EBI]
GO:0018130        [VIEW IN EMBL-EBI]
GO:0019438        [VIEW IN EMBL-EBI]
GO:0031974        [VIEW IN EMBL-EBI]
GO:0031981        [VIEW IN EMBL-EBI]
GO:0032774        [VIEW IN EMBL-EBI]
GO:0032991        [VIEW IN EMBL-EBI]
GO:0034641        [VIEW IN EMBL-EBI]
GO:0034645        [VIEW IN EMBL-EBI]
GO:0034654        [VIEW IN EMBL-EBI]
GO:0040034        [VIEW IN EMBL-EBI]
GO:0043170        [VIEW IN EMBL-EBI]
GO:0043226        [VIEW IN EMBL-EBI]
GO:0043227        [VIEW IN EMBL-EBI]
GO:0043229        [VIEW IN EMBL-EBI]
GO:0043231        [VIEW IN EMBL-EBI]
GO:0043233        [VIEW IN EMBL-EBI]
GO:0044237        [VIEW IN EMBL-EBI]
GO:0044238        [VIEW IN EMBL-EBI]
GO:0044249        [VIEW IN EMBL-EBI]
GO:0044260        [VIEW IN EMBL-EBI]
GO:0044271        [VIEW IN EMBL-EBI]
GO:0044422        [VIEW IN EMBL-EBI]
GO:0044424        [VIEW IN EMBL-EBI]
GO:0044428        [VIEW IN EMBL-EBI]
GO:0044446        [VIEW IN EMBL-EBI]
GO:0044451        [VIEW IN EMBL-EBI]
GO:0044464        [VIEW IN EMBL-EBI]
GO:0046483        [VIEW IN EMBL-EBI]
GO:0050789        [VIEW IN EMBL-EBI]
GO:0050793        [VIEW IN EMBL-EBI]
GO:0051239        [VIEW IN EMBL-EBI]
GO:0065007        [VIEW IN EMBL-EBI]
GO:0070013        [VIEW IN EMBL-EBI]
GO:0071704        [VIEW IN EMBL-EBI]
GO:0090213        [VIEW IN EMBL-EBI]
GO:0090304        [VIEW IN EMBL-EBI]
GO:0097659        [VIEW IN EMBL-EBI]
GO:1901360        [VIEW IN EMBL-EBI]
GO:1901362        [VIEW IN EMBL-EBI]
GO:1901576        [VIEW IN EMBL-EBI]
GO:2000026        [VIEW IN EMBL-EBI]

Sequence

CDS:  
ATGCAAAGGTATCATCCTGCCAACTGCACCAGTGCAGTTAATAACAGTGCAATTGGTGGAGCCTCAGCTAGGGATACTTCCCGAGCTGACTCATCTACATTACCACCTAATTTCTCATTGAATTCTAGGCGGCAATCCCAGCTAGCACCCTACAAATTAAAGTGTGACAAGGAATCTCTTAATTCTAGACTCGGGCCACCTGATTTTCATCCTCAGTCCCAAAATTGTCCTGAGGAAACTCTCACTAGGGAAAATGTGCAGCAGGGGTATAAGGAGACTATTGATGGACTGGAGGATTCTAAAGAGATTTCGTTGACTCAGATTCAGGCTTTTACAAAGCCAGTTGTCCTAAAGTGCAGAGATGCAATTAGAAAGTGTCTGAGGGCTATCAATGAGTCTCGTGCTCAAAAGCGAAAGGCTGGCCAGGTTTATGGTATTCCTCTTTCTGGTTCACTATTAAGTAAACCTGGGGTTTTCCCTGAACAAAGGCCGTGCAATGAAGATTTCAGAAAGAAATGGATTGAAGGCTTATCACAGCAACACAAACGTTTGCGTTCTTTGGCTGATCAAGTTCCTCATGGGTATAGGAAGAGAACATTAATAGAAGTTCTTATCCGGAATAATGTTCCGTTATTGAGAGCAACTTGGTTTATCAAAGTAACCTACCTTAATCAGGTTCGCCCTGGTTCTGCAATTTCTTCTGGAGCACCTGATAAAACTCAGTTATCTCGTACAGAGCTCTGGACAAAAGATGTTATTGATTATCTACAATACCTTCTGGATGAATTTTCTTCAAGAAATAATTCTCATTCTACTCAACATGGTAGAGATAGATTGCCACAAATGCTTTATACTGGGTCTTTGCAGCACAGGAATGATTCAGCATTGACAATCGTTGATGGTGAGGAGCCGTCCCTTCACTTTAAATGGTGGTATGTGGTGCGTCTCTTGCAATGGCATCATGCAGAAGGACTGGTTCTGCCTTCTCTTATCATTGATTGGGTTCTGAGTCAACTGCAGGAAAAGGAATTGCTAGAGATTCTGCAGTTACTATTGCCTATTATATATGGAGTTTTAGAAACCATAATTCTATGTCAGACATATGTACGCAATCTTGTGGGTATAGCTATTCGCTTTATCCGTGAGCCTTCTCCTGGTGGATCTGATCTAGTTGATAATTCCCGGAGGGCATATACGATATCTGCACTGGTTGAGATGCTTCGCTATTTGATACAGGCTGTCCCAGATACATTTGTTGCTTTAGATTGCTTTCCTTTACCAGCTTGTGTAGTCTCACATGCATTGAATGATGGTGGCTTTTTATCAAAGTCATCAGATGATGCAGGGAAAACAAAAAATACCTTAGCAGATGCTTATGTTCTCAAAGGTAGAGGATTTGATTCTCAATACCAGTCCTTGTCATTTGATCATGTTGTTTCCACCATCCAGAAACGGGCTGATTATCTTGCCAAAGGTGCAAGTGCTGAATATCCCAGCCAAAGTGTGGCTAAAGCTGTACAGACTCTGGATAAAGCTCTTTTGCAAGGAGATCTAGTAGAGGCTTATAAACATATCTTTGAAGATCTTTGTGATGGAGTAGTTGGAGAAGGTTGGGTTGCAGAAGTCAGTCCATGCTTAAGATCATCACTAAAATGGATTCGAACTGTGAATGTGTCCTTAATTTGCTCTGTTTTTTTCCTTTGTGAGTGGGCAACATGTGATTTCAGAGACTTCCGTACTGCTCCACCCCGTGACGTGAAGTTCACTGGCAGAAAAGATATTTCACAAATATATCTTGCAATTCAGCTTTTGAAGCTAAAGATGAGAGAATTGCAGAATCCACAACACAAGAATGGCAGGGCGTCCAAAAGCACTGCAAAGTATAGCAGTCAGCAGAATAATTATTCCCGCAGGACATTGTTGGGAAATCAATATGAAGCTAAAAGCAATGCAAGAGGTATGGATGGAAGAAGTAGCAATTCTTCAGATCTATTTGACAGCCCAGGTCCTCTTCATGATATTATTGTGTGCTGGATCGATCAACATGAAGGACATAAAGGAGAAGGTGGTAAGCGCCTTCAGCTTTTTGTATTAGAACTCATACGATCAGGAATCTTTTATCCTCTGGCATATGTGAGGCAGCTACTAGTTAGTGGAATTATTGATACAAATGGACCTGCGGGTGACCTGGACAGAAGGAAGAGACACCATCGAATATTGAAGCAGCTTCCGGGGCAGTTTATGTGCGATGCTTTGGAAGAAGCAAGAATTGCTGAAGCCTCAGAACTGCTTGAGGCTGTTAATGTTTACTCAAATGAACGCCGTCTTGTCCTTAAGGGGCTTCTGTTTGATCAATGTAATAATGGAAATTATGCTAATGTATCATCCAAGAAGCAAAAGTATCATGCTACCTCTGCTAAGGATGCCGCTTCACAAGCTTTAGGTGATCAGTGGAAAATTGGTCAGTCTTCGAAGACTTTCAGGAGAGATGTGGATCTTGAAGAATTGAAGGCTTCCATCTCAGCGTTGTTGCAATTCCCTAGCTCATCTTCTACGTCTGCAGACAGTGGAGTGGATGAGTCTCAAGGGAGTGCCAAGAGGTCTGTTGGGTCAATAGGCAACAAGATGGATTCCTTTGAAGGTACTCCTGGGTGTGAAGATTGTAAAAGGGTGAAAAGACAGAAATTAAGTGAGGAAAAGAGTTCAAGTCTTCAAGTACCTTCACCAATTCCATCAGATGATGAAGATACTTGGTGGGTGAGGAAGGGACCGAAAAACTTAGAGCCATTTAAAGCCGATCCTCCACTTAAGTCAACAAAGCAAGTTTCTCGGGGTAGGCAGAAGACTGTGCGTAAAACCCAATCTCTTGCTCAATTAGCAGCTGCTAGAATTGAGGGTAGCCAGGGAGCATCGACAAGTCATGTGTGCGATAACAAGATAAGCTGCCCACATCATAGAACTGATGCGGAAACTTTAAAGCCTGTGGATGGGATCAGAACAACCCCTTCTGGAGATATTGTGTCGATTGGAAAGGGTTTAAAGCAGCTTCGCTTTGTGGAGAAGCGGACTGTTACAGTTTGGTTGATATCTGTAGTTAGGCAGCTTGTTGAGGAATATGAGAAATCTGTGGCCAAGGTTGGCCAGTATGGCAGGCCATTTGTTGCAGCTGATGAGAAGAGTCCTCTAAGGTGGAAGCTTGGTGAGGATGAGCTATCAACTATACTGTATTTAATGGATGTTTCTTGCGATTCAGCTCTGGCAGTCAAATTTCTCCTTTGGTTGTTGCCAAAAGTTATTAGTAATCCCAGTCCTACCATTCATGGTGGGAGAAACATTATTATGGTGCCCAGGAATGTGGAAAATCATGCATGTGAAGTTGGGGAGGCATACCTTTTATCATCACTCCGAAGGTATGAGAACATACTTATTGCTGCAGATCTTATTCCTGAAGCTTTGTCAGCTACAATGCATCGTGCTGCAGCAGTTCTGGCCACCAATGGCAGAATTACAGGTTCTGGAGCCCTAGTTTTTGCTCGGTATTTGTTGAAGAGGTATGGCAATATTACTAGTGTCATTGATTGGGAGAAGAATTTCAAGCCAACTTGCGATAAGAGACTTTTATCTGAACTTGAATCTGGACGAACGGTTGATGGAGAGTTTGGGTTTCCACTTGGAGTTCCAGCAGGGATTGAAGATCCTGATGATTATTACCGTCAAAAGATAGCCTCTGGACGAGTATCTAGAGTGGGTTTGAACATGAGAGATATGGTTCAGCGTCATATTGATGATGTCTTGCACTATTTCTTAGGTAAGGAGAGAAAACTTTTTGCAGGCAATGCACCAAAAGGTCTTGCCATGGAAAAAGGGGACGATGGTTATCAAGTTGCTCAACAAATCATAGTGGGACTATTGGAGTGTCTTAGGCAGACTGGTGGTGCTGCTCAAGAAGGGGATCCGGGTTTGCTTTCTTCTGCTATATCTGCCATTGTTAGCAATGTTGGACCAGCCATAGCAAAGATACCTGACTTAACTGTTGGTGGCAATTATTCGAATTATCAGCAACCTGTGAATTCCCTGAATATTGCCAAGCGCATCTTGCGCATTCATATAATTTGTCTATCCCTCCTAAAGGAAGCTCTTGGAGAGCGCCAAAGCCGGGCATTTGAGGTAGCTCTTGGAACAGAGGCTTCTTCTGCTTTAGCTGTAGCATTTGCTCCTGCAAAGTCCTCCCGAGGTCAGTTTCAGTTGCCTCCTGATGGTCCTGATTCTAATGCTAATATTCCTGGTGACAATATGAGCTCTGCGAAAGTGACCCTTGGGAGAACAACCAAAATGGCGGCTGCTGTTTCTGCTCTTTTCATTGGTGCTGTTATTCATGGGGTTATTAGCTTGGAGAGAATGGTATCAGTCTTACGATTAAAGGAAGGCTTGGATGTTGTTCAGTTTGTAAGGAATACAAAAACTAGTTCCAATGGTAATGCTCGATCAGCTGGGCCTTTTAAGGATAACTCAGTTGAAGTTAATGTGCATTGGTTTCGGTTGTTTGTTGGTAACTGCAGAACTGTTTGTGATGGACTAGTTTTGGAACTTCTAGGTGAACAATCTGTTGTAGCTCTTTCGAGGATGCAGAGATTGCTCCCTATAGATTTGGTCTTTCCACCGGCTTATGCAATATTTGCATTTGTTATATGGAAGCCATTCATTTTGAATAGTAACATTGCAACTCGGGAGGATATCCATCAGTTATATCTATCTTTAACAATGGCCATTGGGGATGCCATTAAACATATGCCGTTTCGAGATGCTTGTATGAGGGATAGCCGTACTTTCTATGATATTGTAGCTGCAGATACCACTGATACTGAGTTTGCAGCCTTACTAGAGATGAATGGTTTGGACATGCACTTGAAATCCATGGCCTTTGTTCCTCTCCGTGCAAGGCTCTTTCTAAATGCTATAATTGATTGTGAGATGCCTTATTCTGCTTCCCAACAGGATGATGGGACTCGGGTTTCTGGACATAGTGAGTCTAAAGCTCTACGTGAGAGTGAGCCTAAGCTTTCTGATAAGCTTGTTCGTGCATTGGACACTCTGCAGCCTGCTAAATTTCATTGGCAGTGGGTTGAGTTAAGGCTTCTTTTAAATGAACAAGCACTGATTGATAAAATGGAGAACCATGATATGCCTTTGGTAGATGCCATTCGCTCATCCTCACCCAGTTCTGAAAGAGCTTCTCCGTCTGAGAATGAGAAATTTTTAATTGAGATAATCCTCACTAGGTTGTTGGTCAGACCTGATGCTGCTTCCCTTTTCTCAGAGGTAATTCACCTATTTGGAAGGTCATTAGAGGATTCCATGTTGATGCAGGCTAAATGGTTCCTAGGGGGCCAAGATGTTCTTTTGGGGCGGAAGACTGTTAGGCAAAAGCTGATTAATATCGCTGAAAGTAGGAGCCTTTCTACGAAGACCCAGTTTTGGAAGCCTTGGGGTTGGTCTCATTCTGGTGTTGATCCTATAACAAACAGGGGAGACAAGAAGAAGTATGAAGTCACCTCTCTGGAGGAAGGTGAAGTCATTGAGGATGGCATGGAGTCAAAAAGGCATGTGAAAGGTTCCAGTAAAGTTGATCTTGGTTCCAGTATCAGCCGGCTGCATGTAACTGAGAAGGCTTTTGTTGAATTGGTTCTTCCTTGCATAGACCAAAGCTCTGATGATTCACGCAATACCTTTGCAAGTGATTTGATAAAGCAGTTTAACACTATTGAGCAACAAATGAGCTCAGTTACTCGTGGTGTAAGCAAGCAGACTGGATCAGCCTCTTCTGGAATTGAAGGTTCCGTTAGTAAAGGTAACAATCGCAAAGGCATGAGAGGTGGCAGTCCTGGAATGTCCAGACGAACGGTGGTACCTGCAGAGTCTGCGCCTCCTTCCCCTGCAGCTTTGCAAGCTTCCATGTCACTGAGGTTGCAGATTATTGTCAGATTGTTGCCAATCATATGTGCAGATGGGGAGCCATCAGCACGCAACATGAGGCACATGCTTGCCTCTGTAATACTTCGATTGCTTGGAAGTAGGGTTGTTCATGAGGATGTGGATCTATCTCTTAATCTCTTAAACTCGAAAAGGGACATGGAGATGATGTCATCGGTTGCTTCCTCAGAAATGTCCGGAGATAGTCTTTTTGATCGCTTATTGTTAGTTCTTCATGGGTTGTTAAGCAGTTGCCAGCCAAATTGGCTAAGGTCAAAGACTGCCACCAAAGCTACCAGTGAAATTGCCAAGAATTCTTCTGGATTTGACCGTGAGGCGGTGGAGAGTTTGCAGAATGAATTGGATTCTATGCAATTGCCTGAAATGATTAGATGGCGTATCCAAGCTGCAATGCCGATATTATTTCCTTCTTTTCGCAATTTGATCTCCTGCCATACACCTTCTGTCCCAATTGGTGCTCTTAGTTCGCTTCAACCCAGCATCTTTGTCCCAGGATCTTACCCTGGAACTTTGAGCGCACCTCAAAGACAGGGTCCATCAACACGAACATCAAATAATACACAAGGAAAGTCCAAGTCAATGCCTGTAGTACAGGAATATGATATGGAAATTGACCCATGGACACTTTTGGAAGATGGAGCGGGATCAGGTCCATCTACAAGTAGCACTGCTGTCATTGGCAGTAGTGACCATGCTAATCTTCGAGCCTCTAGTTGGCTTAAGGGGGCTGTAAGAGTGAGGCGGACAGATCTTACATATATTGGGGCTGTGGATGATGACAGTTGA
Protein:  
MQRYHPANCTSAVNNSAIGGASARDTSRADSSTLPPNFSLNSRRQSQLAPYKLKCDKESLNSRLGPPDFHPQSQNCPEETLTRENVQQGYKETIDGLEDSKEISLTQIQAFTKPVVLKCRDAIRKCLRAINESRAQKRKAGQVYGIPLSGSLLSKPGVFPEQRPCNEDFRKKWIEGLSQQHKRLRSLADQVPHGYRKRTLIEVLIRNNVPLLRATWFIKVTYLNQVRPGSAISSGAPDKTQLSRTELWTKDVIDYLQYLLDEFSSRNNSHSTQHGRDRLPQMLYTGSLQHRNDSALTIVDGEEPSLHFKWWYVVRLLQWHHAEGLVLPSLIIDWVLSQLQEKELLEILQLLLPIIYGVLETIILCQTYVRNLVGIAIRFIREPSPGGSDLVDNSRRAYTISALVEMLRYLIQAVPDTFVALDCFPLPACVVSHALNDGGFLSKSSDDAGKTKNTLADAYVLKGRGFDSQYQSLSFDHVVSTIQKRADYLAKGASAEYPSQSVAKAVQTLDKALLQGDLVEAYKHIFEDLCDGVVGEGWVAEVSPCLRSSLKWIRTVNVSLICSVFFLCEWATCDFRDFRTAPPRDVKFTGRKDISQIYLAIQLLKLKMRELQNPQHKNGRASKSTAKYSSQQNNYSRRTLLGNQYEAKSNARGMDGRSSNSSDLFDSPGPLHDIIVCWIDQHEGHKGEGGKRLQLFVLELIRSGIFYPLAYVRQLLVSGIIDTNGPAGDLDRRKRHHRILKQLPGQFMCDALEEARIAEASELLEAVNVYSNERRLVLKGLLFDQCNNGNYANVSSKKQKYHATSAKDAASQALGDQWKIGQSSKTFRRDVDLEELKASISALLQFPSSSSTSADSGVDESQGSAKRSVGSIGNKMDSFEGTPGCEDCKRVKRQKLSEEKSSSLQVPSPIPSDDEDTWWVRKGPKNLEPFKADPPLKSTKQVSRGRQKTVRKTQSLAQLAAARIEGSQGASTSHVCDNKISCPHHRTDAETLKPVDGIRTTPSGDIVSIGKGLKQLRFVEKRTVTVWLISVVRQLVEEYEKSVAKVGQYGRPFVAADEKSPLRWKLGEDELSTILYLMDVSCDSALAVKFLLWLLPKVISNPSPTIHGGRNIIMVPRNVENHACEVGEAYLLSSLRRYENILIAADLIPEALSATMHRAAAVLATNGRITGSGALVFARYLLKRYGNITSVIDWEKNFKPTCDKRLLSELESGRTVDGEFGFPLGVPAGIEDPDDYYRQKIASGRVSRVGLNMRDMVQRHIDDVLHYFLGKERKLFAGNAPKGLAMEKGDDGYQVAQQIIVGLLECLRQTGGAAQEGDPGLLSSAISAIVSNVGPAIAKIPDLTVGGNYSNYQQPVNSLNIAKRILRIHIICLSLLKEALGERQSRAFEVALGTEASSALAVAFAPAKSSRGQFQLPPDGPDSNANIPGDNMSSAKVTLGRTTKMAAAVSALFIGAVIHGVISLERMVSVLRLKEGLDVVQFVRNTKTSSNGNARSAGPFKDNSVEVNVHWFRLFVGNCRTVCDGLVLELLGEQSVVALSRMQRLLPIDLVFPPAYAIFAFVIWKPFILNSNIATREDIHQLYLSLTMAIGDAIKHMPFRDACMRDSRTFYDIVAADTTDTEFAALLEMNGLDMHLKSMAFVPLRARLFLNAIIDCEMPYSASQQDDGTRVSGHSESKALRESEPKLSDKLVRALDTLQPAKFHWQWVELRLLLNEQALIDKMENHDMPLVDAIRSSSPSSERASPSENEKFLIEIILTRLLVRPDAASLFSEVIHLFGRSLEDSMLMQAKWFLGGQDVLLGRKTVRQKLINIAESRSLSTKTQFWKPWGWSHSGVDPITNRGDKKKYEVTSLEEGEVIEDGMESKRHVKGSSKVDLGSSISRLHVTEKAFVELVLPCIDQSSDDSRNTFASDLIKQFNTIEQQMSSVTRGVSKQTGSASSGIEGSVSKGNNRKGMRGGSPGMSRRTVVPAESAPPSPAALQASMSLRLQIIVRLLPIICADGEPSARNMRHMLASVILRLLGSRVVHEDVDLSLNLLNSKRDMEMMSSVASSEMSGDSLFDRLLLVLHGLLSSCQPNWLRSKTATKATSEIAKNSSGFDREAVESLQNELDSMQLPEMIRWRIQAAMPILFPSFRNLISCHTPSVPIGALSSLQPSIFVPGSYPGTLSAPQRQGPSTRTSNNTQGKSKSMPVVQEYDMEIDPWTLLEDGAGSGPSTSSTAVIGSSDHANLRASSWLKGAVRVRRTDLTYIGAVDDDS